PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G024700.1.p
Common NameGLYMA_20G024700, LOC100811666
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 669aa    MW: 78103.7 Da    PI: 6.3475
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G024700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.93.3e-2358142190
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          +fYn YAke GF +r+s+s  + +++e +++++ Cs  g++++++ +     ++r+etrtgC a++++++ ++++w++ ++el+HnH+++
  Glyma.20G024700.1.p  58 NFYNIYAKEQGFGIRVSNSWFRLKKKERYRAKLSCSSAGFKKKSEAN-----NPRPETRTGCPAMIVIRMVESNRWRIVEVELQHNHQVS 142
                          6*********************99999***************99888.....9**********************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2158143IPR004330FAR1 DNA binding domain
PfamPF105511.8E-23263356IPR018289MULE transposase domain
PROSITE profilePS509669.211550586IPR007527Zinc finger, SWIM-type
PfamPF044344.3E-4558583IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-6561588IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEEVCLNSEP LFDESDEVDV EGNSSVAEHD LESLNSQPNN SPLPTVGLEF DSFDEVYNFY  60
NIYAKEQGFG IRVSNSWFRL KKKERYRAKL SCSSAGFKKK SEANNPRPET RTGCPAMIVI  120
RMVESNRWRI VEVELQHNHQ VSPQSKRFYK SHKKMIVEAS KSQPPSEPVT EVHTIKLYRT  180
TVMDVDYNGY SNFEESRDTN FDKLKYLELR EGDASAIYNY FCRMKLTDPN FFYLFDIDDD  240
GHLKNVFWAD SRSRIAYNYF NDIVTIDTTC LANKYEIPLI SFVGVNHHGH SVLLGCGFLG  300
HESVDYFVWI FKAWLQCMLG HPPHVVITDQ CKPLQIAVAQ VFPHARHCYS LQYIMQRVPE  360
KLGGLQGYEE IRRQLYNAVY ESLKIVEFES SWADMIKCHG LVDNKWLQTL YKDRHLWVPV  420
YLKDAFFIGL IPTKENEGLT AFFDGYVHKH TSFKEFVDKY DLVLHRKHLK EAMADLETRN  480
VSFELKTRCN FEVQLAKVYT KEIFQKFQSE VEGMYSCFNT RQVSVNGSII TYVVKERVEV  540
EGNEKGVKSF EVLYETTELD IRCICSLFNY KGYLCRHALN VLNYNGIEEI PSRYILHRWR  600
RDFKQMFNQF HVYDNVDSHN PVPLYTRLFN SALPVLEVGA QSQEHYMVAL KELEELLGKF  660
DIEDNNIM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.4760.0somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556689.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_014628515.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_014628516.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
SwissprotQ9SSQ40.0FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLK7N0Y70.0K7N0Y7_SOYBN; Uncharacterized protein
STRINGGLYMA20G02970.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.10.0FAR1-related sequence 6